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accession-icon GSE45551
Prevention of Mouse AA with IL-15 pathway inhibitors
  • organism-icon Mus musculus
  • sample-icon 45 Downloadable Samples
  • Technology Badge Icon

Description

Our goal was to identify gene expression patterns that correlated with prevention of autoimmune alopecia in C3H/HeJ mice following alopecic graft transplantation

Publication Title

Alopecia areata is driven by cytotoxic T lymphocytes and is reversed by JAK inhibition.

Alternate Accession IDs

E-GEOD-45551

Sample Metadata Fields

Specimen part, Treatment

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accession-icon GSE61555
Treatment of C3H/HeJ grafted mice with baricitinib
  • organism-icon Mus musculus
  • sample-icon 24 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Reversal of Alopecia Areata Following Treatment With the JAK1/2 Inhibitor Baricitinib.

Alternate Accession IDs

E-GEOD-61555

Sample Metadata Fields

Specimen part, Treatment, Time

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accession-icon GSE44337
Expression data from iMyc mouse B lymphoma and human DLBCL
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 22 Downloadable Samples
  • Technology Badge Icon

Description

Cross-species comparative gene expression profiling was performed to identify differentially expressed genes conserved in aggressive B lymphomas.

Publication Title

Identification of candidate B-lymphoma genes by cross-species gene expression profiling.

Alternate Accession IDs

E-GEOD-44337

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE8949
Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
  • organism-icon Mus musculus
  • sample-icon 11 Downloadable Samples
  • Technology Badge Icon

Description

Ligand-mediated activation of the nuclear hormone receptor PPAR gamma lowers blood pressure and improves glucose tolerance in humans. Two naturally occurring mutations (P467L, V290M) in the ligand binding domain of PPAR gamma have been described in humans that lead to severe insulin resistance and hypertension. Experimental evidence suggests that these mutant versions of PPAR gamma act in a dominant negative fashion. To better understand the molecular mechanisms underlying PPAR gamma action in the vasculature, we determined the gene expression patterns in mouse aorta in response to activation or interference with the PPAR gamma signaling pathway.

Publication Title

Bioinformatic analysis of gene sets regulated by ligand-activated and dominant-negative peroxisome proliferator-activated receptor gamma in mouse aorta.

Alternate Accession IDs

E-GEOD-8949

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE61554
Treatment of C3H/HeJ grafted mice with baricitinib [topical]
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon

Description

The C3H/HeJ grafted model of alopecia areata was used to determine the efficacy of systemic baricitinib at preventing alopecia or treating established disease.

Publication Title

Reversal of Alopecia Areata Following Treatment With the JAK1/2 Inhibitor Baricitinib.

Alternate Accession IDs

E-GEOD-61554

Sample Metadata Fields

Specimen part, Treatment, Time

View Samples
accession-icon GSE61552
Treatment of C3H/HeJ grafted mice with baricitinib [systemic]
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon

Description

The C3H/HeJ grafted model of alopecia areata was used to determine the efficacy of systemic baricitinib at preventing alopecia or treating established disease.

Publication Title

Reversal of Alopecia Areata Following Treatment With the JAK1/2 Inhibitor Baricitinib.

Alternate Accession IDs

E-GEOD-61552

Sample Metadata Fields

Specimen part, Treatment, Time

View Samples
accession-icon GSE16994
Microarray analysis of iris gene expression in mice with mutations influencing pigmentation
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon

Description

Several ocular diseases involve the iris, notably including oculocutaneous albinism, pigment dispersion syndrome, and exfoliation syndrome. To screen for candidate genes that may be active in these diseases, genome-wide iris gene expression patterns were comparatively analyzed from mouse models of these conditions.

Publication Title

Microarray analysis of iris gene expression in mice with mutations influencing pigmentation.

Alternate Accession IDs

E-GEOD-16994

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE11870
Gene expression changes in primary aortic endothelial cells during expression of dominant negative PPAR gamma (V290M).
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

Ligand-mediated activation of the nuclear hormone receptor PPAR gamma lowers blood pressure and improves glucose tolerance in humans. Two naturally occurring mutations (P467L, V290M) in the ligand binding domain of PPAR gamma have been described in humans that lead to severe insulin resistance and hypertension. Experimental evidence suggests that these mutant versions of PPAR gamma act in a dominant negative fashion. To better understand the molecular mechanisms underlying PPAR gamma action in the vasculature, we determined the global gene expression profile in primary aortic endothelial cells in response to endothelial cell specific expression of a dominant negative isoform of PPAR gamma (V290M).

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-11870

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE14243
Gene expression changes in As4.1 cells during treatment with interleukin (IL) or hydrogen peroxide (HP)
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

As4.1 cells are a renin-expressing cell line commonly used to study the molecular regulation of the mouse renin gene. In the present study, the global gene expression profile was assessed in these cells under control conditions (VEHICLE) and after treatment with interleukin (IL) or hydrogen peroxide (HP), both of which negatively regulate mouse renin gene expression.

Publication Title

Regulation of renin gene expression by oxidative stress.

Alternate Accession IDs

E-GEOD-14243

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE117013
Gene expression array of brain, mandible and maxilla tissues from P0 FoxO6-/- and wildtype mice
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon

Description

FoxO6 is expressed in the brain, craniofacial region and somite, but the precise role of FoxO6 in craniofacial development remain unknown. We found that FoxO6 is expressed specifically in craniofacial tissues and FoxO6-/- mice undergo expansion of the face, frontal cortex, olfactory component and skull.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-117013

Sample Metadata Fields

Specimen part

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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