github link Compendia packages the data processed by pipelines for flexible and broad use by computational biologists and data scientists


RNA-seq Sample Compendia

Get the collection of Salmon output as quant.sf files for an organism's RNA-seq samples for maximum flexibility

Fetching RNA-seq Sample Compendia

Uniformly Processed
RNA-seq sample compendia process - input file to salmon to tximport

All RNA-seq samples are uniformly processed using Salmon and the output quant.sf files are zipped together. Note: This compendia is not normalized or aggregated.

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Choose the quant.sf files by experiment or samples using our API.

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