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accession-icon GSE13672
Mouse mpkCCD cells, Rat Kidney Proximal Tubule, and Rat Kidney Medullary Thick Ascending Limb
  • organism-icon Mus musculus, Rattus norvegicus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

A series contains a set of transcript intensity values measured by Affymetrix microarray.

Publication Title

Systems-level analysis of cell-specific AQP2 gene expression in renal collecting duct.

Alternate Accession IDs

E-GEOD-13672

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE13667
mpkCCD_Cell_Clones
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

This series of microarray data contain transcript intensity of mpkCCD cells.

Publication Title

Systems-level analysis of cell-specific AQP2 gene expression in renal collecting duct.

Alternate Accession IDs

E-GEOD-13667

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE19938
Expression data from mouse collecting duct cell, mpkCCD, in response to a peptide hormone vasopressin analog, dDAVP
  • organism-icon Mus musculus
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon

Description

Vasopressin is the major hormone that regulates renal water excretion. It does so by binding to a receptor in renal collecting duct cells, triggering signaling pathways that ultimately regulate the abundance, location, and activity of the water channel protein aquaporin 2. We took an advantage of quantitative large scale proteomic technologies and oligonucleotide microarrays to quantify steady state changes in protein and transcript abundances in response to vasopressin in a collecting duct cell line, mpkCCD clone 11 (Yu et al. PNAS 2009, 106:2441-2446). This cell line originally developed by Alan Vandewalles group recapitulates vasopressin-mediated AQP2 expression and phosphorylation as seen in native colleting duct cells.

Publication Title

Quantitative protein and mRNA profiling shows selective post-transcriptional control of protein expression by vasopressin in kidney cells.

Alternate Accession IDs

E-GEOD-19938

Sample Metadata Fields

Specimen part, Cell line

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accession-icon GSE14459
NSCLC metastasis: K-ras/p53 mutant and syngeneic mouse models
  • organism-icon Mus musculus
  • sample-icon 27 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Expression signatures of metastatic capacity in a genetic mouse model of lung adenocarcinoma.

Alternate Accession IDs

E-GEOD-14459

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE10290
Gene expression analyses of PR action in the mammary gland of ovariectomized mice
  • organism-icon Mus musculus
  • sample-icon 24 Downloadable Samples
  • Technology Badge Icon

Description

Beyond demonstrating a critical role for progesterone receptor signaling in normal mammary epithelial proliferation, the progesterone receptor knockout mouse disclosed the progesterone receptor along with its effector pathways as key determinants of mammary neoplastic progression. Despite these advances, however, further progress in our mechanistic understanding of progesterones involvement in mammary morphogenesis and tumorigenesis is contingent upon defining the essential effector pathways responsible for transducing the progesterone signal into a mammary proliferative and/or pro-survival response. Toward this goal, a judiciously chosen acute progesterone treatment regimen together with microarray methods was applied to the mammary gland of the normal mouse to uncover new effectors that operate immediately downstream of the progesterone mammary signal. Examination of the resultant progesterone-responsive transcriptome disclosed inhibitor of differentiation or DNA binding 4 (Id4) as a molecular target acutely induced by progesterone in the murine mammary epithelium.

Publication Title

Transcriptional response of the murine mammary gland to acute progesterone exposure.

Alternate Accession IDs

E-GEOD-10290

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE9914
Expression data from early symptomatic Sca1154Q/2Q and Sca7266Q/5Q knock-in cerebellum
  • organism-icon Mus musculus
  • sample-icon 22 Downloadable Samples
  • Technology Badge Icon

Description

Comparative analysis of cerebellar gene expression changes occurring in Sca1154Q/2Q and Sca7266Q/5Q knock-in mice

Publication Title

The insulin-like growth factor pathway is altered in spinocerebellar ataxia type 1 and type 7.

Alternate Accession IDs

E-GEOD-9914

Sample Metadata Fields

Sex, Age

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accession-icon GSE48622
Transcriptional Profiling of Neuronal APP/APLP2 Double-Conditional Knockout Mice.
  • organism-icon Mus musculus
  • sample-icon 16 Downloadable Samples
  • Technology Badge Icon

Description

Gene expression analysis of 2-month-old APP/APLP2 double-conditional Knockout (N-dCKO) mice and littermate APLP2 knockout controls, APP knockout and wildtype controls.

Publication Title

Soluble amyloid precursor protein (APP) regulates transthyretin and Klotho gene expression without rescuing the essential function of APP.

Alternate Accession IDs

E-GEOD-48622

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE53480
Expression data from Tg4510 and Wild-type mice after AAVTFEB injection
  • organism-icon Mus musculus
  • sample-icon 16 Downloadable Samples
  • Technology Badge Icon

Description

We used microarrays to detail the global programme of gene expression after 4 months of TFEB overexpression in the brain.

Publication Title

Selective clearance of aberrant tau proteins and rescue of neurotoxicity by transcription factor EB.

Alternate Accession IDs

E-GEOD-53480

Sample Metadata Fields

Specimen part, Treatment

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accession-icon GSE42888
Progesterone Receptor Targetome in the Mammary Gland
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-42888

Sample Metadata Fields

Sex, Age, Specimen part, Treatment

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accession-icon GSE13104
p53+/- mouse osteosarcoma RNA array (with mc3T3 and one RS control)
  • organism-icon Mus musculus
  • sample-icon 13 Downloadable Samples
  • Technology Badge Icon

Description

RNA expression profiles from 12 (twelve) osteosarcomas arisen from p53+/- mouse were compared with a mc3T3 osteoblast control, and a rhabdomyosarcoma expression profile which was from a mouse with the same genetic background.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-13104

Sample Metadata Fields

Specimen part

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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