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accession-icon GSE16389
Global analysis of gene expression by SV40 T antigen in the mouse small intestine epithelium
  • organism-icon Mus musculus
  • sample-icon 17 Downloadable Samples
  • Technology Badge Icon

Description

SV40 large T antigen (TAg) contributes to cell transformation, in part, by targeting two well characterized tumor suppressors, pRb and p53. TAg expression affects the transcriptional circuits controlled by Rb and by p53. We have performed a microarray analysis to examine the global change in gene expression induced by wild-type TAg and TAg-mutants, in an effort to link changes in gene expression to specific transforming functions. For this analysis we have used enterocytes from the mouse small intestine expressing TAg. Expression of TAg in the mouse intestine results in hyperplasia and dysplasia. Our analysis indicates that practically all gene expression regulated by TAg in enterocytes is dependent upon its binding and inactivation of the Rb-family proteins.

Publication Title

Simian virus 40 T-antigen-mediated gene regulation in enterocytes is controlled primarily by the Rb-E2F pathway.

Alternate Accession IDs

E-GEOD-16389

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE56009
E2f and Myc transcriptional programs and chromatin binding landscapes in the small intestines
  • organism-icon Mus musculus
  • sample-icon 30 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Redeployment of Myc and E2f1-3 drives Rb-deficient cell cycles.

Alternate Accession IDs

E-GEOD-56009

Sample Metadata Fields

Specimen part

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accession-icon GSE16454
Gene expression data from small intestines
  • organism-icon Mus musculus
  • sample-icon 23 Downloadable Samples
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Description

Rb and E2F are thought to play antagonistic roles in celll proliferation. However, this model is based mostly from in vitro cell culture systems. We used small intestines to test this model in vivo.

Publication Title

E2f1-3 switch from activators in progenitor cells to repressors in differentiating cells.

Alternate Accession IDs

E-GEOD-16454

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE71383
Balanced E2F transcriptional output is essential for tumor suppression in the liver
  • organism-icon Mus musculus
  • sample-icon 59 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

E2f8 mediates tumor suppression in postnatal liver development.

Alternate Accession IDs

E-GEOD-71383

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE25166
Subcellular expression profiling of the growth cones of retinal ganglion cells (RGC)
  • organism-icon Xenopus laevis, Mus musculus
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon

Description

Cue-directed axon guidance depends partly on local translation in growth cones. Many mRNA transcripts are known to reside in developing axons yet little is known about their subcellular distribution or, specifically, which transcripts are in growth cones.

Publication Title

Subcellular profiling reveals distinct and developmentally regulated repertoire of growth cone mRNAs.

Alternate Accession IDs

E-GEOD-25166

Sample Metadata Fields

Specimen part

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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