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accession-icon GSE25825
Expression data from MxCre;E2F1-/-2-/-3f/f Cd11B myeloid cells
  • organism-icon Mus musculus
  • sample-icon 5 Downloadable Samples
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Description

To understand the underlying cause for the observed apoptosis in E2f1-3 deficient myeloid cells. We compared gene expression profiles of Cd11b+ sorted myeloid cells isolated from bone marrow of control (E2F1-/- ) and experimental (Mxcre;E2F1-/-2-/-3f/f ) mice.

Publication Title

E2f1-3 are critical for myeloid development.

Alternate Accession IDs

E-GEOD-25825

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE44166
Expression Data from Normal or ErbB2 Tumor Fibroblasts With or Without Ets2
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon

Description

The mechanisms involved in epithelium-stroma interactions remain poorly understood, despite the importance of the microenvironment during tumorigenesis. Here, we studied the role of Ets2 transcrpiton factor in tumor associated fibroblasts in the MMTV-ErbB2 mammary tumor model. Inactivation of Ets2 specifically in fibroblasts using Fsp-cre significantly reduced tumor growth, in contrast to Ets2 inactivation in epithelium in which no differences in tumor growth were observed.

Publication Title

Ets2 in tumor fibroblasts promotes angiogenesis in breast cancer.

Alternate Accession IDs

E-GEOD-44166

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE107297
Bone density loci identified by genome-wide association studies segregate a lineage-specific PU.1-dependent gene regulatory network in osteoclasts
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 12 Downloadable Samples
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Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Enhancer variants reveal a conserved transcription factor network governed by PU.1 during osteoclast differentiation.

Alternate Accession IDs

E-GEOD-107297

Sample Metadata Fields

Specimen part

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accession-icon GSE107295
Bone density loci identified by genome-wide association studies segregate a lineage-specific PU.1-dependent gene regulatory network in osteoclasts [HsMmMicroarray]
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon

Description

Similar temporal expression kinetics of transcription factors in human and mouse osteoclast differentiation evaluated by microarray

Publication Title

Enhancer variants reveal a conserved transcription factor network governed by PU.1 during osteoclast differentiation.

Alternate Accession IDs

E-GEOD-107295

Sample Metadata Fields

Specimen part

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accession-icon GSE16073
Expression Data from Pten Null Fibroblasts
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

The tumor stroma is believed to contribute to some of the most malignant characteristics of epithelial tumors. However, signaling between stromal and tumor cells is complex and remains poorly understood. Here we show that genetic inactivation of Pten in stromal fibroblasts of mouse mammary glands accelerated the initiation, progression and malignant transformation of mammary epithelial tumors.

Publication Title

Pten in stromal fibroblasts suppresses mammary epithelial tumours.

Alternate Accession IDs

E-GEOD-16073

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE64303
Expression Data from Pten mutant epithelial cells
  • organism-icon Mus musculus
  • sample-icon 16 Downloadable Samples
  • Technology Badge Icon

Description

PTEN imparts tumor suppression in mice by cell autonomous and non-autonomous mechanisms. Whether these two tumor suppressor roles are mediated through similar or distinct signaling pathways is not known. Here we generated and analyzed knockin mice that express a series of human cancer-derived mutant alleles of PTEN in either stromal or tumor cell compartments of mammary glands. We find that cell non-autonomous tumor suppression by Pten in stromal fibroblasts strictly requires activation of P-Akt signaling, whereas cell autonomous tumor suppression in epithelial tumor cells is independent of overt canonical pathway activation

Publication Title

Noncatalytic PTEN missense mutation predisposes to organ-selective cancer development in vivo.

Alternate Accession IDs

E-GEOD-64303

Sample Metadata Fields

Age, Specimen part

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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