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accession-icon GSE16655
Developmental stage-specific interplay between GATA1 and IGF signaling in fetal hematopoiesis and leukemogenesis
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 47 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Developmental stage-specific interplay of GATA1 and IGF signaling in fetal megakaryopoiesis and leukemogenesis.

Alternate Accession IDs

E-GEOD-16655

Sample Metadata Fields

Specimen part, Disease, Cell line, Treatment

View Samples
accession-icon GSE16676
Rescue of murine Gata1s mutant M7 leukemic cells by full-length Gata1
  • organism-icon Mus musculus
  • sample-icon 11 Downloadable Samples
  • Technology Badge Icon

Description

In this project, we studied a mouse model of human Down Syndrome (DS) megakaryocytic leukemia involving mutations in the GATA1 transcription factor (called GATA1s mutation). The model was generated through retroviral insertional mutagenesis in Gata1s mutant fetal liver progenitors. In this study, we analyzed the dependency of these leukemic cells on the Gata1s mutant protein.

Publication Title

Developmental stage-specific interplay of GATA1 and IGF signaling in fetal megakaryopoiesis and leukemogenesis.

Alternate Accession IDs

E-GEOD-16676

Sample Metadata Fields

Specimen part, Cell line, Treatment

View Samples
accession-icon GSE16679
Plag1 overexpression cooperates with Evi1 overexpression and Gata1s mutation in leading to M7 leukemia
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon

Description

The goal of this study is to develop a Plag1 signature and determine how its overexpression contributes to leukemogenesis.

Publication Title

Developmental stage-specific interplay of GATA1 and IGF signaling in fetal megakaryopoiesis and leukemogenesis.

Alternate Accession IDs

E-GEOD-16679

Sample Metadata Fields

Cell line

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accession-icon GSE16684
Murine M7 leukemia derived from retroviral insertional mutagenesis of Gata1s fetal progenitors depends on IGF signaling
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

The goal of this study is to derive a mouse model of human Down Syndrome (DS) megakaryocytic leukemia involving mutations in the hematopoietic transcription factor, GATA1 (called GATA1s mutation). We achieved this through transduction of Gata1s mutant fetal progenitors by MSCV-based retrovirus expressing a GFP marker, followed by in vitro selection (for immortalized cell lines), and then in vivo selection (for transformed cell lines) through transplantation.

Publication Title

Developmental stage-specific interplay of GATA1 and IGF signaling in fetal megakaryopoiesis and leukemogenesis.

Alternate Accession IDs

E-GEOD-16684

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE16682
Murine M7 leukemia derived from retroviral insertional mutagenesis of Gata1s fetal progenitors
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon

Description

The goal of this study is to derive a mouse model of human Down Syndrome (DS) megakaryocytic leukemia involving mutations in the hematopoietic transcription factor, GATA1 (called GATA1s mutation). We achieved this through transduction of Gata1s mutant fetal progenitors by MSCV-based retrovirus expressing a GFP marker, followed by in vitro selection (for immortalized cell lines), and then in vivo selection (for transformed cell lines) through transplantation.

Publication Title

Developmental stage-specific interplay of GATA1 and IGF signaling in fetal megakaryopoiesis and leukemogenesis.

Alternate Accession IDs

E-GEOD-16682

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE48600
Microarray expression analysis of wild type and Erg knockdown bone marrow hematopoietic stem and progenitor cells
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon

Description

Erg is an ETS family transcription factor frequently overexpressed in human leukemias and has been implicated as a key regulator of hematopoietic stem cells (HSCs). However how Erg controls normal hematopoiesis, particularly at the stem cell level, remains poorly understood. Using homologous recombination, we generated an Erg knockdown allele (Ergkd) in which Erg expression can be restored upon Cre-mediated excision of a Stopper cassette. In Ergkd/+ mice, ~40% reduction in Erg dosage perturbed both fetal liver and bone marrow hematopoiesis by reducing the numbers of Lin-Sca-1+c-Kit+ (LSK) hematopoietic stem and progenitor cells (HSPCs) and megakaryocytic progenitors.

Publication Title

Reduced Erg Dosage Impairs Survival of Hematopoietic Stem and Progenitor Cells.

Alternate Accession IDs

E-GEOD-48600

Sample Metadata Fields

Specimen part

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accession-icon GSE33024
Sequentially acting Sox transcription factors in neural lineage development
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Sequentially acting Sox transcription factors in neural lineage development.

Alternate Accession IDs

E-GEOD-33024

Sample Metadata Fields

Specimen part

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accession-icon GSE33061
Sequentially acting Sox transcription factors in neural lineage development [microarray]
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

We report sequential binding but unique functions of different Sox transcription factors during distinct stages of neural differentiation

Publication Title

Sequentially acting Sox transcription factors in neural lineage development.

Alternate Accession IDs

E-GEOD-33061

Sample Metadata Fields

Specimen part

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accession-icon GSE34963
The Polycomb Repressive Complex 2 Is Required For MLL-AF9 Leukemia
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Polycomb repressive complex 2 is required for MLL-AF9 leukemia.

Alternate Accession IDs

E-GEOD-34963

Sample Metadata Fields

Specimen part, Disease, Disease stage

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accession-icon GSE34959
Expression profiling of primary wild type (WT), Ezh2-null and Eed-null murine MLL-AF9 AML
  • organism-icon Mus musculus
  • sample-icon 9 Downloadable Samples
  • Technology Badge Icon

Description

We evaluated gene expression changes in murine leukemia caused by retroviral overexpression of MLL-AF9. We compared wild-type (WT) leukemia cells with mutant leukemia cells after cre-mediated inactivation of homozygous conditional alleles for Ezh2 or Eed, both of which are components of the Polycomb Repressive Complex2.

Publication Title

Polycomb repressive complex 2 is required for MLL-AF9 leukemia.

Alternate Accession IDs

E-GEOD-34959

Sample Metadata Fields

Specimen part, Disease, Disease stage

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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