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Mus musculus
8 Downloadable Samples
Affymetrix Mouse Gene 1.1 ST Array (mogene11st)
Description

Colon cancer is a major cause of cancer deaths in Western countries and is associated with diets high in red meat. Heme, the iron-porphyrin pigment of red meat, induces cytotoxicity of gut contents which injures surface cells leading to compensatory hyperproliferation of crypt cells. This hyperproli ...See More

Publication Title

Dietary heme alters microbiota and mucosa of mouse colon without functional changes in host-microbe cross-talk.

Alternate Accession IDs
E-GEOD-40672
Sample Metadata Fields

Sex, Age, Specimen part

Mus musculus
2 Downloadable Samples
Affymetrix Mouse Gene 1.0 ST Array (mogene10st)
Description

Previously, we showed that dietary heme injured the colonic surface epithelium and induced hyperproliferation by changing the surface to crypt signaling. In this study we investigated whether bacteria play a role in this changed signaling. Dietary heme increased the Bacteroidetes and decreased the F ...See More

Publication Title

Dietary heme alters microbiota and mucosa of mouse colon without functional changes in host-microbe cross-talk.

Alternate Accession IDs
E-GEOD-34253
Sample Metadata Fields

Sex, Age, Specimen part, Treatment

Mus musculus
23 Downloadable Samples
Affymetrix Mouse Gene 1.1 ST Array (mogene11st)
Description

Red meat consumption is associated with an increased colon cancer risk. Heme, present in red meat, injures the colon surface epithelium by luminal cytotoxicity and reactive oxygen species. This surface injury is overcompensated by hyperproliferation and hyperplasia of crypt cells. Transcriptome anal ...See More

Publication Title

Dietary heme-mediated PPARα activation does not affect the heme-induced epithelial hyperproliferation and hyperplasia in mouse colon.

Alternate Accession IDs
E-GEOD-37006
Sample Metadata Fields

Sex, Specimen part

Homo sapiens
23 Downloadable Samples
Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)
Description

Probiotic bacteria, specific representatives of bacterial species that are a common part of the human microbiota, are proposed to deliver health benefits to the consumer by modulation of intestinal function via largely unknown molecular mechanisms. To explore in vivo mucosal responses of healthy adu ...See More

Publication Title

Human mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathways.

Alternate Accession IDs
E-GEOD-18741
Sample Metadata Fields

Specimen part

Mus musculus
18 Downloadable Samples
Affymetrix Mouse Gene 1.1 ST Array (mogene11st)
Description

Colorectal cancer risk is associated with diets high in red meat. Heme, the pigment of red meat, induces cytotoxicity of colonic contents and elicits epithelial damage and compensatory hyperproliferation, leading to hyperplasia. Here we explore the possible causal role of the gut microbiota in heme- ...See More

Publication Title

Gut microbiota facilitates dietary heme-induced epithelial hyperproliferation by opening the mucus barrier in colon.

Alternate Accession IDs
E-GEOD-40670
Sample Metadata Fields

Sex, Age, Specimen part

Homo sapiens
32 Downloadable Samples
Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)
Description

Some commensal bacteria stimulate the immune system but do not present specific antigenicity. Such adjuvant effects have been reported for the bacterial species Lactobacillus plantarum. To study in vivo human responses to L. plantarum, a randomised double-blind placebo-controlled cross-over study wa ...See More

Publication Title

Differential NF-kappaB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance.

Alternate Accession IDs
E-GEOD-11355
Sample Metadata Fields

No sample metadata fields

Mus musculus
9 Downloadable Samples
Affymetrix Mouse Genome 430 2.0 Array (mouse4302)
Description

We studied the effect of dietary fat type, varying in polyunsaturated/saturated fatty acid ratio's (P/S) on development of metabolic syndrome. C57Bl/6J mice were fed purified high-fat diets (45E% fat) containing palm oil (HF-PO; P/S 0.4), olive oil (HF-OO; P/S 1.1) or safflower oil (HF-SO; P/S 7.8) ...See More

Publication Title

Saturated fat stimulates obesity and hepatic steatosis and affects gut microbiota composition by an enhanced overflow of dietary fat to the distal intestine.

Alternate Accession IDs
E-GEOD-18586
Sample Metadata Fields

Sex, Specimen part

Arabidopsis thaliana
6 Downloadable Samples
Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)
Description

Alterations of hydrogen peroxide (H2O2) levels have a profound impact on numerous signaling cascades orchestrating stress responses, plant growth and development, including programmed cell death. To expand the repertoire of known molecular mechanisms implicated in H2O2 signaling, we performed a forw ...See More

Publication Title

Chemical Genetics Approach Identifies Abnormal Inflorescence Meristem 1 as a Putative Target of a Novel Sulfonamide That Protects Catalase2-Deficient <i>Arabidopsis</i> against Photorespiratory Stress.

Alternate Accession IDs
E-GEOD-155026
Sample Metadata Fields

Specimen part

Mus musculus
19 Downloadable Samples
Affymetrix Mouse Gene 1.0 ST Array (mogene10st), Affymetrix Mouse Genome 430 2.0 Array (mouse4302)
Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Dietary haem stimulates epithelial cell turnover by downregulating feedback inhibitors of proliferation in murine colon.

Alternate Accession IDs
E-GEOD-27849
Sample Metadata Fields

Sex, Age, Specimen part, Treatment

Mus musculus
16 Downloadable Samples
Affymetrix Mouse Genome 430 2.0 Array (mouse4302)
Description

The risk for colon cancer is associated with nutrition, especially high fat and low calcium diets high in red meat. Red meat contains the iron porphyrin pigment heme, which induces cytotoxicity of the colon contents and epithelial hyperproliferation. Using a mouse model, we showed that heme caused d ...See More

Publication Title

Dietary haem stimulates epithelial cell turnover by downregulating feedback inhibitors of proliferation in murine colon.

Alternate Accession IDs
E-GEOD-27848
Sample Metadata Fields

Sex, Age, Specimen part, Treatment

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