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Homo sapiens
8 Downloadable Samples
Illumina HiSeq 2500
Description

Prdx2 is the thioredoxin-dependent peroxidase that reduces H2O2 using reducing power NADPH in the presence of thioredoxin and thioredoxin reductase. Prdx2 plays an important role in growth. factor signaling in mammlian cells. Therefore, we examined the gene expression in colon adenocarcinoma cell li ...See More

Publication Title

Interaction of tankyrase and peroxiredoxin II is indispensable for the survival of colorectal cancer cells.

Alternate Accession IDs
GSE81429
Sample Metadata Fields

Cell line, Subject

Homo sapiens
4 Downloadable Samples
Illumina HiSeq 2500
Description

Although cancer stem cells (CSCs) are thought to be responsible for tumor recurrence and resistance to chemotherapy, CSC-related research and drug development have been hampered by the limited supply of patient-derived diverse CSCs. Here, we developed a functional polymer thin film (PTF) platform th ...See More

Publication Title

Polymer Thin Film-Induced Tumor Spheroids Acquire Cancer Stem Cell-like Properties.

Alternate Accession IDs
GSE106848
Sample Metadata Fields

Specimen part, Subject

Homo sapiens
18 Downloadable Samples
Illumina HumanHT-12 V4.0 expression beadchip
Description

nc886 is a 101 nucleotides long non-coding RNA that is also known as a precursor microRNA or a vault RNA. nc886 has been suggested to be a tumor suppressor, mainly inferred by its expression pattern as well as its genomic location at human chromosome 5q31, a locus for a tumor suppressor gene(s).

Publication Title

Epigenetic silencing of the non-coding RNA nc886 provokes oncogenes during human esophageal tumorigenesis.

Alternate Accession IDs
E-GEOD-51732
Sample Metadata Fields

Cell line, Treatment

Mus musculus
6 Downloadable Samples
Affymetrix Mouse Genome 430 2.0 Array (mouse4302)
Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

An integrated systems biology approach identifies positive cofactor 4 as a factor that increases reprogramming efficiency.

Alternate Accession IDs
E-GEOD-74156
Sample Metadata Fields

Sex, Specimen part

Mus musculus
6 Downloadable Samples
Affymetrix Mouse Genome 430 2.0 Array (mouse4302)
Description

Multipotent spermatogonial stem cells (mSSCs) derived from SSCs are a potential new source of individualized pluripotent cells in regenerate medicine such as ESCs. We hypothesized that the culture-induced reprogramming of SSCs was mediated by a mechanism different from that of iPS, and was due to up ...See More

Publication Title

An integrated systems biology approach identifies positive cofactor 4 as a factor that increases reprogramming efficiency.

Alternate Accession IDs
E-GEOD-74151
Sample Metadata Fields

Sex, Specimen part

Mus musculus
2 Downloadable Samples
Illumina HiSeq 2500
Description

Spermatogonial stem cells (SSCs) can spontaneously dedifferentiate into embryonic stem cell (ESC)-like cells, which are designated as multipotent SSCs (mSSCs), without ectopic expression of reprogramming factors. SSCs express key OSKM reprogramming factors at some levels, and do not require ectopic ...See More

Publication Title

An integrated systems biology approach identifies positive cofactor 4 as a factor that increases reprogramming efficiency.

Alternate Accession IDs
GSE74149
Sample Metadata Fields

Specimen part, Cell line, Subject

Homo sapiens
6 Downloadable Samples
Affymetrix Human Gene 1.0 ST Array (hugene10st)
Description

The aim of this study was to evaluate and compare the gene expression profiles of dental follicle and periodontal ligament in humans, which can possibly explain their functions of dental follicle and PDL such as eruption coordination and stress resorption. That may apply this information to clinical ...See More

Publication Title

Comparative gene-expression analysis of the dental follicle and periodontal ligament in humans.

Alternate Accession IDs
E-GEOD-51342
Sample Metadata Fields

Specimen part

Mus musculus
2 Downloadable Samples
Illumina HiSeq 2000
Description

Sought to isolate multiple long non-coding RNAs (lncRNAs) specifically expressed during murine embryogenesis. Multiple tissue-specifically expressed lncRNAs were identified based on differential expression levels between telencephalon and whole body. Detailed funtional analysis of one of the lncRNAs ...See More

Publication Title

Isolation and Functional Examination of the Long Non-Coding RNA <i>Redrum</i>.

Alternate Accession IDs
GSE103986
Sample Metadata Fields

Specimen part, Cell line, Subject

Arabidopsis thaliana
6 Downloadable Samples
Illumina HiSeq 2000
Description

The cell wall is a defining feature of plant cells and glues cells to each other. To overcome this physical constraint, plants must process and disconnect cell wall linkages during growth and development. However, little is known about the mechanism guiding cell-cell detachment and cell wall remodel ...See More

Publication Title

A Lignin Molecular Brace Controls Precision Processing of Cell Walls Critical for Surface Integrity in Arabidopsis.

Alternate Accession IDs
GSE110213
Sample Metadata Fields

Specimen part, Subject

Homo sapiens
138 Downloadable Samples
Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)
Description

Background:

Publication Title

Prediction of recurrence-free survival in postoperative non-small cell lung cancer patients by using an integrated model of clinical information and gene expression.

Alternate Accession IDs
E-GEOD-8894
Sample Metadata Fields

Sex, Age, Specimen part

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