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Mus musculus
6 Downloadable Samples
Affymetrix Mouse Gene 1.0 ST Array (mogene10st)
Description

Expression of meningioma 1 (MN1) has been proposed to be a negative prognostic molecular marker in adult AML with normal cytogenetics, however its role in pediatric leukemia is unknown. We found elevated MN1 expression in 53 of 88 pediatric leukemia cases: significant amounts of MN1 were found in im ...See More

Publication Title

Functional characterization of high levels of meningioma 1 as collaborating oncogene in acute leukemia.

Alternate Accession IDs
E-GEOD-13189
Sample Metadata Fields

No sample metadata fields

Mus musculus
4 Downloadable Samples
Affymetrix Mouse Genome 430 2.0 Array (mouse4302)
Description

Ubiquitination is a post-translational mechanism of control of diverse cellular processes. We focus here on the ubiquitin ligase Fbw7, a recently identified hematopoietic tumor suppressor that can target for degradation several important oncogenes including Notch1, c-Myc and cyclin E. We have genera ...See More

Publication Title

Control of hematopoietic stem cell quiescence by the E3 ubiquitin ligase Fbw7.

Alternate Accession IDs
E-GEOD-11178
Sample Metadata Fields

No sample metadata fields

Mus musculus
28 Downloadable Samples
Affymetrix Mouse Genome 430 2.0 Array (mouse4302)
Description

Most human B cell lymphomas (B-NHL) are derived from germinal centers (GCs), the structure where B-cells undergo class switch recombination (CSR) and somatic hypermutation (SHM) and are selected for high-affinity antibody production. The pathogenesis of B-NHL is associated with distinct genetic les ...See More

Publication Title

AID is required for germinal center-derived lymphomagenesis.

Alternate Accession IDs
E-GEOD-9249
Sample Metadata Fields

Specimen part

Homo sapiens
228 Downloadable Samples
NextSeq 500
Description

Surface expression of the viral Envelope protein (Env) was used to enrich reactivated latent T cells producing HIV-RNA, and single cell RNASeq was performed to study gene expression differences between latent cells and controls. Overall design: Latent CD4+ T cells from virologically suppressed patie ...See More

Publication Title

Clonal CD4<sup>+</sup> T cells in the HIV-1 latent reservoir display a distinct gene profile upon reactivation.

Alternate Accession IDs
GSE104490
Sample Metadata Fields

Subject

Mus musculus
9 Downloadable Samples
Affymetrix Mouse Genome 430A 2.0 Array (mouse430a2)
Description

We have cloned and characterized a fusion gene NUP98/HHEX1 resulting from t(7;10) from a patient with acute myeloid leukemia (AML). As NUP98/HHEX acts as an aberrant transcriptional activator, putative targets were searched upon transient expression of the fusion in primary murine bone marrow cells.

Publication Title

Leukemogenic mechanisms and targets of a NUP98/HHEX fusion in acute myeloid leukemia.

Alternate Accession IDs
E-GEOD-10909
Sample Metadata Fields

No sample metadata fields

Mus musculus
4 Downloadable Samples
Affymetrix Mouse Genome 430 2.0 Array (mouse4302)
Description

The Hedgehog (Hh) signaling pathway is a developmentally conserved regulator of stem cell function. Several reports suggested that Hh signaling is an important regulator of hematopoietic stem cell (HSC) maintenance and differentiation. Here we test this hypothesis in vivo using both gain- and loss-o ...See More

Publication Title

Hedgehog signaling is dispensable for adult hematopoietic stem cell function.

Alternate Accession IDs
E-GEOD-15194
Sample Metadata Fields

Sex

Description

Blimp-1 expression in T cells extinguishes the T follicular helper cell fate and drives terminal differentiation, but also limits autoimmunity. Although various factors have been described to control Blimp-1 expression in T cells, little is known about what regulates Blimp-1 expression in Th2 cells ...See More

Publication Title

IL-10 induces a STAT3-dependent autoregulatory loop in T<sub>H</sub>2 cells that promotes Blimp-1 restriction of cell expansion via antagonism of STAT5 target genes.

Alternate Accession IDs
GSE110176
Sample Metadata Fields

Specimen part, Subject

Mus musculus
31 Downloadable Samples
Affymetrix Mouse Gene 2.1 ST Array (mogene21st)
Description

Zinc is an essential micronutrient in pregnancy and zinc deficiency impairs fetal growth. We used a mouse model of moderate zinc deficiency to determine how zinc is important to placental morphogenesis.

Publication Title

Zinc is a critical regulator of placental morphogenesis and maternal hemodynamics during pregnancy in mice.

Alternate Accession IDs
E-GEOD-97112
Sample Metadata Fields

Specimen part

Mus musculus
2 Downloadable Samples
Illumina Genome Analyzer IIx
Description

Genome-wide analysis was performed on microRNA 155+/+ and -/- Th17 cells to determine the differentially expressed transcripts that are regulated by miR-155. We found that Jarid2 was differentially expressed in absence of miR-155 and highlight the mechanism for the silencing of IL-22 by Jarid2 and P ...See More

Publication Title

miR-155 activates cytokine gene expression in Th17 cells by regulating the DNA-binding protein Jarid2 to relieve polycomb-mediated repression.

Alternate Accession IDs
GSE37228
Sample Metadata Fields

Specimen part, Cell line, Subject

Homo sapiens
116 Downloadable Samples
Affymetrix Human Exon 1.0 ST Array [transcript (gene) version (huex10st)
Description

Trisomy 21 (Ts21) or Down syndrome (DS) is the most common genetic cause of intellectual disability. To investigate the consequences of Ts21 on human brain development, we have systematically analyzed the transcriptome of dorsolateral prefrontal cortex (DFC) and cerebellar cortex (CBC) using exon ar ...See More

Publication Title

Down Syndrome Developmental Brain Transcriptome Reveals Defective Oligodendrocyte Differentiation and Myelination.

Alternate Accession IDs
E-GEOD-59630
Sample Metadata Fields

Sex, Disease, Race

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