Build and Download Custom Datasets

refine.bio helps you build ready-to-use datasets with normalized transcriptome data from all of the world’s genetic databases.

Filters

Organism

Technology

Platforms

Showing
of 398 results
Sort by
Mus musculus
2 Downloadable Samples
Illumina HiSeq 2500
Description

BCAS2 (Breast cancer amplified sequence 2) is involved in multiple biological processes, including pre-mRNA splicing. However, the physiological roles of BCAS2 are still largely unclear. Here we report that BCAS2 is specifically enriched in spermatogonia of mouse testes. Conditional disruption of Bc ...See More

Publication Title

BCAS2 is involved in alternative mRNA splicing in spermatogonia and the transition to meiosis.

Alternate Accession IDs
GSE89801
Sample Metadata Fields

Specimen part, Cell line, Subject

Mus musculus
116 Downloadable Samples
Illumina HiSeq 2000
Description

Differentiated cell can be reprogrammed into totipotent embryo through somatic cell nuclear transfer (SCNT). However, this process is highly inefficient and most cloned embryos arrest at certain developmental stages. Through single cell sequencing combined with embryo biopsy, here we generate a glob ...See More

Publication Title

Identification of key factors conquering developmental arrest of somatic cell cloned embryos by combining embryo biopsy and single-cell sequencing.

Alternate Accession IDs
GSE70605
Sample Metadata Fields

No sample metadata fields

Rattus norvegicus
12 Downloadable Samples
Affymetrix Rat Genome 230 2.0 Array (rat2302)
Description

Acute lung injury (ALI) refers to a clinical syndrome characterized by bilateral lung injury, severe lung diffuse failure and hypoxemia caused by non-cardiogenic pulmonary edema.Sepsis is the leading etiology of ALI and a common admission to the intensive care unit, which induces pulmonary inflammat ...See More

Publication Title

Hypoxia Exacerbates Inflammatory Acute Lung Injury <i>via</i> the Toll-Like Receptor 4 Signaling Pathway.

Alternate Accession IDs
E-GEOD-111241
Sample Metadata Fields

Specimen part

Description

Human umbilical vein vascular endothelial cells (HUVECs) are crucial for angiogenesis that benefits functional recovery after cerebral infarction. This study aims to investigate the mechanisms underlying the effects of vascular endothelial growth factor (VEGF) on HUVECs. Overall design: HUVECs were ...See More

Publication Title

Transcriptome Sequencing to Identify Transcription Factor Regulatory Network and Alternative Splicing in Endothelial Cells Under VEGF Stimulation.

Alternate Accession IDs
GSE71216
Sample Metadata Fields

No sample metadata fields

Homo sapiens
3 Downloadable Samples
Illumina HumanHT-12 V3.0 expression beadchip
Description

A GAPDH siRNA was overexpressed in HeLa cells and microarray expression profiling was performed to experimentally identify the off-targets of this siRNA at the transcriptome level. Among all predicted siRNA off-targets by MirTarget2, the majority were downregulated by at least 10% (i.e. less than 90 ...See More

Publication Title

Rational design of microRNA-siRNA chimeras for multifunctional target suppression.

Alternate Accession IDs
E-GEOD-41924
Sample Metadata Fields

Cell line, Treatment

Mus musculus
53 Downloadable Samples
Illumina HiSeq 2500
Description

Comprehensive knowledge of the dynamic changes in the cardiac transciptome can inform disease mechanism. Previous transcriptome profiling studies on heart failure rely on either microarray or RNA-Seq with low coverage, leaving a large portion of the transcriptome unexplored. Additionally, previous s ...See More

Publication Title

Revealing Pathway Dynamics in Heart Diseases by Analyzing Multiple Differential Networks.

Alternate Accession IDs
GSE66630
Sample Metadata Fields

No sample metadata fields

Homo sapiens
27 Downloadable Samples
Affymetrix Human Transcriptome Array 2.0 (hta20)
Description

To identify the driver factors in liver metastasis of colorectal cancer, and seek for possible biomarkers, we applied array trascriptome detection using approaches tailored to FFPE derived RNA

Publication Title

Weighted gene co-expression network analysis of colorectal cancer liver metastasis genome sequencing data and screening of anti-metastasis drugs.

Alternate Accession IDs
E-GEOD-72718
Sample Metadata Fields

Specimen part

Homo sapiens
20 Downloadable Samples
Illumina HiSeq 2000
Description

Acute mountain sickness (AMS), which may progress to life-threatening high altitude cerebral edema, is a major threat to millions of people who live in or travel to high altitude. Although studies have revealed the risk factors and pathophysiology theories of AMS, the molecular mechanisms of it do n ...See More

Publication Title

Targeting JUN, CEBPB, and HDAC3: A Novel Strategy to Overcome Drug Resistance in Hypoxic Glioblastoma.

Alternate Accession IDs
GSE75665
Sample Metadata Fields

No sample metadata fields

Mus musculus
6 Downloadable Samples
Affymetrix Mouse Gene 1.0 ST Array (mogene10st)
Description

It has been demonstrated previously that the reprogramming factors are sequestered in the pronuclei of zygote after fertilization, as the enucleated zygotes at interphase cannot support the development of cloned embryos whereas the enucleated zygotes at M-phase can reprogram somatic cells to full pl ...See More

Publication Title

Asymmetric reprogramming capacity of parental pronuclei in mouse zygotes.

Alternate Accession IDs
E-GEOD-49148
Sample Metadata Fields

Cell line

Homo sapiens
2 Downloadable Samples
Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)
Description

SMEI patient induced pluripotent stem cells (iPSCs) were derived from patient fibroblasts. In order to test the similarity between patient iPSCs and human embryonic stem (hES) cells, microarry analysis was carried out on SMEI patient iPSCs and human embryonic stem cells.

Publication Title

Modeling Dravet syndrome using induced pluripotent stem cells (iPSCs) and directly converted neurons.

Alternate Accession IDs
E-GEOD-46472
Sample Metadata Fields

Specimen part, Disease, Disease stage

...
Jump to page