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refine.bio helps you build ready-to-use datasets with normalized transcriptome data from all of the world’s genetic databases.

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Homo sapiens
5 Downloadable Samples
Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)
Description

Gene expression study of DSG2 silenced human microvascular endothelial cells

Publication Title

Desmoglein-2-integrin Beta-8 interaction regulates actin assembly in endothelial cells: deregulation in systemic sclerosis.

Alternate Accession IDs
E-GEOD-21547
Sample Metadata Fields

Specimen part

Homo sapiens
6 Downloadable Samples
Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)
Description

Determine the effect of miR-203 expression on the global mRNA expression in mesenchymal breast cancer cell line.

Publication Title

Epigenetic silencing of microRNA-203 is required for EMT and cancer stem cell properties.

Alternate Accession IDs
E-GEOD-50697
Sample Metadata Fields

Specimen part, Cell line, Treatment

Homo sapiens
60 Downloadable Samples
Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)
Description

Peripheral T-cell lymphoma unspecified (PTCL/U), the most common form of PTCL, displays heterogeneous morphology and phenotype, poor response to treatment, and dismal prognosis. We demonstrate that PTCL/U shows a gene expression profile clearly distinct from that of normal T-cells. Comparison with t ...See More

Publication Title

Gene expression analysis of peripheral T cell lymphoma, unspecified, reveals distinct profiles and new potential therapeutic targets.

Alternate Accession IDs
E-GEOD-6338
Sample Metadata Fields

No sample metadata fields

Homo sapiens
49 Downloadable Samples
Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2), Affymetrix HT HG-U133+ PM Array Plate (hthgu133pluspm)
Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Dependency of colorectal cancer on a TGF-β-driven program in stromal cells for metastasis initiation.

Alternate Accession IDs
E-GEOD-39397
Sample Metadata Fields

Specimen part, Disease, Disease stage, Treatment, Subject

Homo sapiens
23 Downloadable Samples
Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)
Description

The survival of isolated metastatic cells and expansion into macroscopic tumour has been recognized as a limiting step for metastasis formation in several cancer types yet the determinants of this process remain largely uncharacterized. In colorectal cancer (CRC), we identify a transcriptional progr ...See More

Publication Title

Dependency of colorectal cancer on a TGF-β-driven program in stromal cells for metastasis initiation.

Alternate Accession IDs
E-GEOD-39395
Sample Metadata Fields

Specimen part, Disease, Disease stage, Subject

Homo sapiens
22 Downloadable Samples
Affymetrix HT HG-U133+ PM Array Plate (hthgu133pluspm), Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)
Description

The survival of isolated metastatic cells and expansion into macroscopic tumour has been recognized as a limiting step for metastasis formation in several cancer types yet the determinants of this process remain largely uncharacterized. In colorectal cancer (CRC), we identify a transcriptional progr ...See More

Publication Title

Dependency of colorectal cancer on a TGF-β-driven program in stromal cells for metastasis initiation.

Alternate Accession IDs
E-GEOD-39396
Sample Metadata Fields

Disease, Disease stage, Subject

Homo sapiens
4 Downloadable Samples
Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)
Description

The survival of isolated metastatic cells and expansion into macroscopic tumour has been recognized as a limiting step for metastasis formation in several cancer types yet the determinants of this process remain largely uncharacterized. In colorectal cancer (CRC), we identify a transcriptional progr ...See More

Publication Title

Dependency of colorectal cancer on a TGF-β-driven program in stromal cells for metastasis initiation.

Alternate Accession IDs
E-GEOD-39394
Sample Metadata Fields

Specimen part, Treatment

Description

The Wnt gene family is an evolutionarily conserved group of proteins that regulate cell growth, differentiation, and stem cell self-renewal. Aberrant Wnt signaling in human breast tumors has been proposed to be an attractive drug target, especially in the basal-like subtype where canonical Wnt signa ...See More

Publication Title

The MMTV-Wnt1 murine model produces two phenotypically distinct subtypes of mammary tumors with unique therapeutic responses to an EGFR inhibitor.

Alternate Accession IDs
GSE118163
Sample Metadata Fields

Specimen part, Subject

Mus musculus
8 Downloadable Samples
Affymetrix Mouse Gene 1.0 ST Array (mogene10st)
Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Targeted resequencing identifies PTCH1 as a major contributor to ocular developmental anomalies and extends the SOX2 regulatory network.

Alternate Accession IDs
E-GEOD-74600
Sample Metadata Fields

Specimen part, Time

Mus musculus
9 Downloadable Samples
Illumina HiSeq 2000
Description

Here we show that the histone methyltransferase MLL4 (Kmt2d) is required for stem cell activity and an aggressive form of acute myeloid leukemia (AML) harboring the MLL-AF9 oncogene. MLL4 exerts its function by regulating transcriptional programs associated with the anti-oxidant response. Overall de ...See More

Publication Title

DNA-damage-induced differentiation of leukaemic cells as an anti-cancer barrier.

Alternate Accession IDs
GSE57147
Sample Metadata Fields

No sample metadata fields

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